PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g09240.1
Common NameLR48_Vigan04g223400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 193aa    MW: 22269.3 Da    PI: 9.4712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g09240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18754253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Vang05g09240.1  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                    69******9.**********8.....556*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-34666No hitNo description
PfamPF008471.1E-11755IPR001471AP2/ERF domain
SMARTSM003801.7E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-34764IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-21766IPR016177DNA-binding domain
PRINTSPR003673.1E-11819IPR001471AP2/ERF domain
PRINTSPR003673.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS SLPEPQRVAS PNVITSASNF  120
SVKSNETKTM LPQKREQEEQ EVEENWVLKK VKVERTQQFK PLEEDHIEQM IEELLHYGTV  180
ELCSVIPHHR LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-18871670ATERF1
2gcc_A1e-18871670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136971.11e-130hypothetical protein PHAVU_009G089300g
SwissprotP161461e-83PZ02_LUPPO; Protein PPLZ02
TrEMBLA0A0L9UH881e-143A0A0L9UH88_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBR51e-143A0A0S3RBR5_PHAAN; Uncharacterized protein
STRINGGLYMA04G06690.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-57ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]